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管理和专家团队

卞超

华大海洋研究院副院长

主要研究方向为水生生物基因组学,先后参与建设了深圳市海洋生物基因组学重点实验室、中国科学院大学华大教育中心的海洋生物基因组学方向、深圳市华大海洋研究院,主持、参与动植物基因组项目达十余项,在Nature,Science,Nature genetics,Nature Biotechnology等著名期刊发表论文多篇,影响因子300多分,并且为著名杂志Nature genetics,Frontiers,Scientific reports,Plos One和BMC genetics审稿人。

Research Gate(个人学术网址):https://www.researchgate.net/profile/Chao_Bian3

科研成果

发表动植物基因组文章18篇,影响因子235:并列第一作者7篇,通讯作者1篇

(1) X You, C Bian, Q Zan, Xun Xu, Xin Liu, Jieming Chen, Jintu Wang, Ying Qiu, Wujiao Li, Xinhui Zhang, Ying Sun, Shixi Chen, Wanshu Hong, Yuxiang Li, Shifeng Cheng, Guangyi Fan, Chengcheng Shi, Jie Liang, Y. Tom Tang, Chengye Yang, Zhiqiang Ruan, Jie Bai, Chao Peng, Qian Mu, Jun Lu, Mingjun Fan, Shuang Yang, Zhiyong Huang, Xuanting Jiang, Xiaodong Fang, Guojie Zhang, Yong Zhang, Gianluca Polgar, Hui Yu, Jia Li, Zhongjian Liu, Guoqiang Zhang, Vydianathan Ravi, Steven L. Coon, Jian Wang, Huanming Yang, Byrappa Venkatesh, Jun Wang & Qiong Shi. Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes[J]. Nature Communications, 2014, 5: 5594. 一区,top期刊, 通讯作者,并列第一作者

(2) Xu J, Bian C, Chen K, Liu G, Jiang Y, Luo Q, You X, Peng W, Li J, Huang Y, Yi Y, Dong C, Deng H, Zhang S, Zhang H, Shi Q, Xu P.Draft genome of the Northern snakehead, Channa argus[J]. GigaScience, 6(4):1-5. 二区,并列第一作者

(3) L Song, C Bian, Y Luo, L Wang, X You, J Li, Y Qiu, X Ma, Z Zhu, L Ma, Z Wang, Y Lei, J Qiang, H Li, J Yu, A Wong, J Xu, Q Shi,Pao Xu. Draft genome of the Chinese mitten crab, Eriocheir sinensis [J]. GigaScience, 2016, 6(4):1-6. 二区,并列第一作者

(4) Bian C, Hu Y, Ravi V, Kuznetsova IS, Shen X, Mu X, Sun Y, You X, Li J, Li X, Qiu Y, Tay BH, Thevasagayam NM, Komissarov AS, Trifonov V, Kabilov M, Tupikin A, Luo J, Liu Y, Song H, Liu C, Wang X, Gu D, Yang Y, Li W, Polgar G, Fan G, Zeng P, Zhang H, Xiong Z, Tang Z, Peng C, Ruan Z, Yu H, Chen J, Fan M, Huang Y, Wang M, Zhao X, Hu G, Yang H, Wang J, Wang J, Xu X, Song L, Xu G, Xu P, Xu J, O'Brien SJ, Orbán L, Venkatesh B, Shi Q. The Asian arowana (Scleropages formosus) genome provides new insights into the evolution of an early lineage of teleosts [J]. Scientific Reports. 2016 Apr 19;6:24501. 二区,第一作者

(5) X Chen, L Zhong, C Bian, P Xu, Y Qiu, X You, S Zhang, Y Huang, J Li, M Wang, Q Qin, X Zhu, C Peng, A Wong, Z Zhu, M Wang, R Gu, J Xu, Q Shi,W Bian. High-quality genome assembly of channel catfish, Ictalurus punctatus [J]. GigaScience, 2016, 5:39. 二区,并列第一作者

(6) Liu K, Xu D, Li J, Bian C, Duan J, Zhou Y, Zhang M, You X, You Y, Chen J, Yu H, Xu G, Fang DA, Qiang J, Jiang S, He J, Xu J, Shi Q, Zhang Z, Xu P.Whole genome sequencing of Chinese clearhead icefish, Protosalanx hyalocranius [J]. GigaScience, 6(4):1-6. 二区,并列第一作者

(7) Q Lin,Y Qiu,R Gu, M Xu, J Li, C Bian, H Zhang, G Qin, Y Zhang, W Luo,J Chen, X You, M Fan, M Sun, P Xu, B Venkatesh, J Xu, H Fu, Q Shi. Draft genome of the lined seahorse, Hippocampus erectus [J]. GigaScience, 6(6):1-6. 二区,并列第一作者

(8) Lin Q, Fan S, Zhang Y, Xu M, Zhang H, Yang Y, Lee AP, Woltering JM, Ravi V, Gunter HM, Luo W, Gao Z, Lim ZW, Qin G, Schneider RF, Wang X, Xiong P, Li G, Wang K, Min J, Zhang C, Qiu Y, Bai J, He W, Bian C, Zhang X, Shan D, Qu H, Sun Y, Gao Q, Huang L, Shi Q. Meyer A2, Venkatesh B.The seahorse genome and the evolution of its specialized morphology [J]. Nature. 2016 Dec 14;540(7633):395-399. 一区,top期刊,共同作者

(9) Jiang Y, Xie M, Chen W, Talbot R, Maddox JF, Faraut T, Wu C, Muzny DM, Li Y, Zhang W, Stanton JA, Brauning R, Barris WC, Hourlier T, Aken BL, Searle SMJ, Adelson DL, Bian C, Cam GR, Chen Y, Cheng S, DeSilva U, Dixen K, Dong Y, Fan G, Franklin IR, Fu S, Guan R, Highland MA, Holder ME, Huang G, Ingham AB, Jhangiani SN, Kalra D, Kovar CL, Lee SL, Liu W, Liu X, Lu C, Lv T, Mathew T, McWilliam S, Menzies M, Pan S, Robelin D, Servin B, Townley D, Wang W, Wei B, White SN, Yang X, Ye C, Yue Y, Zeng P, Zhou Q, Hansen JB, Kristensen K, Gibbs RA, Flicek P, Warkup CC, Jones HE22, Oddy VH23, Nicholas FW, McEwan JC, Kijas J, Wang J, Worley KC, Archibald AL, Cockett N, Xu X, Wang W, Dalrymple BP. The Sheep Genome Illuminates Biology of the Rumen and Lipid Metabolism[J]. Science. 2014, 344(6188):1168-1173. 一区,top期刊,共同作者

(10) J Yang, X Chen, J Bai, D Fang, Y Qiu, W Jiang, H Yuan, C Bian, J Lu, S He, X Pan, Y Zhang, X Wang, X You, Y Wang, Y Sun, D Mao, Y Liu, G Fan, H Zhang, X Chen, X Zhang, L Zheng, J Wang, L Cheng, J Chen, Z Ruan, J Li, H Yu, C Peng, X Ma, J Xu, Y He, Z Xu, P Xu, J Wang, H Yang, J Wang, T Whitten, X Xu,Q Shi. The Sinocyclocheilus cavefish genome provides insights into cave adaptation [J]. BMC Biology, 2016, 14:1. 一区, 共同作者

(11) Y Dong, M Xie, Y Jiang, N Xiao, X Du, W Zhang, G Tosser-Klopp, J Wang, S Yang, J, W Chen, J, P, Y, C Bian, S Pan, Y Li, X Liu, W Wang, B Servin, B Sayre, B Zhu, D Sweeney, R Moore, W Nie, Y Shen, R Zhao, G Zhang, J Li, T Faraut, J Womack, Y Zhang, J Kijas, N Cockett, X Xu, S Zhao, J Wang, W Wang. Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus)[J]. Nature Biotechnology, 2013, 31, 135–141. 一区,top期刊, 共同作者

(12) Lewis NE1, Liu X, Li Y, Nagarajan H, Yerganian G, O'Brien E, Bordbar A, Roth AM, Rosenbloom J, Bian C, Xie M, Chen W, Li N, Baycin-Hizal D, Latif H, Forster J, Betenbaugh MJ, Famili I, Xu X, Wang J, Palsson BO. Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome[J]. Nat Biotechnol, 2013, 31(8):759-65. 一区,top期刊,共同作者

(13) G Zhang, X Liu, Z Quan, S Cheng, X Xu, S Pan, M Xie, P Zeng, Z Yue, W Wang, Y Tao, C Bian, C Han, Q Xia, X, P Rui, Cao X, Yang D, Zhan J, Hu Y, Zhang H, Li H, Li N, Li J, Wang C, Wang R, Wang T, Guo Y, Cai C, Liu H, Xiang Q, Shi P, Huang Q, Chen Y, Li J, Wang Z, Zhao J, W Wang. Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential[J]. Nature Biotechnology, 2012, 30, 549–554. 一区,top期刊,共同作者

(14) J Cai, X Liu, K Vanneste, S Proost, W Tsai, K Liu, L Chen, Y He, Q Xu, C Bian, Z Zheng, F Sun, W Liu, Y Hsiao, Z Pan, C Hsu, Y Yang, Y Hsu, Y Chuang, A Dievart, J Dufayard, X Xu, J Wang, J Wang, X Xiao, X Zhao, R Du, G Zhang, M Wang, Y Su, ao-Chang Xie, G Liu, L Li, L Huang, Y Luo, H Chen, Yves Van de Peer,Z Liu. The genome sequence of the orchid Phalaenopsis equestris [J]. Nature Genetics, 2015, 47:65–72. 一区,top期刊,共同作者

(15) S Cheng, E van den Bergh, P Zeng, X Zhong, J Xu, X Liu, J Hofberger, S de Bruijn, A S. Bhide, C Kuelahoglu, C Bian, J Chen, G Fan, K Kaufmann, J C. Hall, A Becker, A Bräutigam, A P.M. Weber, C Shi, Z Zheng, W Li, M Lv, Y Tao, J Wang, H Zou, Z Quan, J M. H, G Zhang, X Zhu, X Xu, M. Eric Schranz. The Tarenaya hassleriana Genome Provides insight Into Reproductive Trait and Genome Evolution of Crucifers[J]. The Plant Cell, 2013, 25(8):2813-2830. 一区,top期刊,共同作者

(16) K Cao, Z Zheng, L Wang, X Liu, G Zhu, W Fang, S Cheng, P Zeng, C Chen, X Wang, M Xie, X Zhong, X Wang, P Zhao, C Bian, Y Zhu, J Zhang, G Ma, C Chen, Y Li, F Hao, Y, G Huang, Y Li, H Li, J Guo, X Xu and J Wang. Comparative population genomics reveals the domestication history of the peach, Prunus persica, and human influences on perennial fruit crops[J]. Genome Biology, 2014, 15:415. 一区,top期刊,共同作者

(17) Cheng S, van den Bergh E, Zeng P, Zhong X, Xu J, Liu X, Hofberger J, de Bruijn S, Bhide AS, Kuelahoglu C, Bian C, Chen J, Fan G, Kaufmann K, Hall JC, Becker A, Bräutigam A, Weber AP, Shi C, Zheng Z, Li W, Lv M, Tao Y, Wang J, Zou H, Quan Z, Hibberd JM, Zhang G, Zhu XG, Xu X, Schranz ME.The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers[J]. Plant Cell, 25(8):2813-30. 一区,top期刊,共同作者

(18) Wang Y, Fan G, Liu Y, Sun F, Shi C, Liu X, Peng J, Chen W, Huang X, Cheng S, Liu Y, Liang X, Zhu H, Bian C, Zhong L, Lv T, Dong H, Liu W, Zhong X, Chen J, Quan Z, Wang Z, Tan B, Lin C, Mu F, Xu X, Ding Y, Guo AY, Wang J, Ke W. The sacred lotus genome provides insights into the evolution of flowering plants[J]. Plant J, 2013, 76(4):557-67. 一区,共同作者